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pcaGoPromoter (version 1.10.0)

pcaGoPromoter is used to analyze DNA micro array data

Description

This package contains functions to ease the analyses of DNA micro arrays. It utilizes principal component analysis as the initial multivariate analysis, followed by functional interpretation of the principal component dimensions with overrepresentation analysis for GO terms and regulatory interpretations using overrepresentation analysis of predicted transcription factor binding sites with the primo algorithm.

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Version

Version

1.10.0

License

GPL (>= 2)

Maintainer

Morten Hansen

Last Published

February 15th, 2017

Functions in pcaGoPromoter (1.10.0)

pca

pca - Principal Component Analysis (PCA)
pcaGoPromoter-package

Tools for analyzing data from DNA micro arrays.
primoData

primoData
primo

primo, primoHits and primoWithLeaveOut
GOtree

GOtree, plot.GOtree and GOtreeWithLeaveOneOut