## Data set with three variables where data points constitute a helix
data(helix)
helixNA <- helix
## not a single complete observation
helixNA <- t(apply(helix, 1, function(x) { x[sample(1:3, 1)] <- NA; x}))
## 50 steps is not enough, for good estimation use 1000
helixNlPca <- pca(helixNA, nPcs=1, method="nlpca", maxSteps=50)
fittedData <- fitted(helixNlPca, helixNA)
plot(fittedData[which(is.na(helixNA))], helix[which(is.na(helixNA))])
## compared to solution by Nipals PCA which cannot extract non-linear patterns
helixNipPca <- pca(helixNA, nPcs=2)
fittedData <- fitted(helixNipPca)
plot(fittedData[which(is.na(helixNA))], helix[which(is.na(helixNA))])
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