cover.to.pool

a matrix with n rows and p columns where n is the number of individuals and p is the number of markers.

data

a matrix with n rows and p columns where n is the number of pools and is the number of markers.

cover.matrix

a list of integers or strings specifying which subpopulation the individuals belong to.

an integer specifying the ploidy of the individuals.

ploidy


<code>cover.to.pool</code> creates a matrix of frequency estimates, given a genotype matrix and a coverage matrix.


Methods to detect genetic markers involved in biological
adaptation. 'pcadapt' provides statistical tools for outlier detection based on
Principal Component Analysis. Implements the method described in (Luu, 2016)
<DOI:10.1111/1755-0998.12592>.

cover.to.pool: Simulate frequency matrix from genotype and coverage matrices

Description

Usage

Arguments