create.pcadapt.pool

a data matrix or a data frame containing the allele frequencies per SNP and per population.

data

an integer specifying the number of principal components to retain.

a value between <code>0</code> and <code>0.45</code> specifying the threshold
of minor allele frequencies above which p-values are computed.

min.maf

a matrix specifying the average coverage per genetic marker and per population.

cover.matrix


<code>create.pcadapt.pool</code> creates an object of class <code>pcadapt</code> for Pool-Seq data.


internal

Methods to detect genetic markers involved in biological
adaptation. 'pcadapt' provides statistical tools for outlier detection based on
Principal Component Analysis. Implements the method described in (Luu, 2016)
<DOI:10.1111/1755-0998.12592>.

create.pcadapt.pool: pcadapt objects

Description

Usage

Arguments