scree_plot

<code>scree_plot</code> plots the scree plot associated with the principal components 
analysis performed on the dataset. NB : <code>pcadapt</code> has to be run on the
dataset in order to get an output readable by <code>plot.screePlot</code>

internal

Methods to detect genetic markers involved in biological
adaptation. 'pcadapt' provides statistical tools for outlier detection based on
Principal Component Analysis. Implements the method described in (Luu, 2016)
<DOI:10.1111/1755-0998.12592> and later revised in (Privé, 2020)
<DOI:10.1093/molbev/msaa053>.

Florian Privé

pcadapt

Fast Principal Component Analysis for Outlier Detection

Keurcien Luu

Michael Blum

Eric Bazin

Nicolas Duforet-Frebourg

scree_plot function

<dl><dt>x</dt>
<dd>an output from <code>pcadapt</code> containing the singular values.</dd>
<dt>K</dt>
<dd>an integer specifying the number of components to plot.</dd></dl>

Arguments

Principal Components Analysis Scree Plot — scree_plot

<dl>

<dt>x</dt>
<dd>an output from <code>pcadapt</code> containing the singular values.</dd>


<dt>K</dt>
<dd>an integer specifying the number of components to plot.</dd>

</dl>

scree_plot: Principal Components Analysis Scree Plot

Description

Usage

Arguments