writeBed

Function to write bed/bim/fam files from a pcadapt or an lfmm file.

Methods to detect genetic markers involved in biological
adaptation. 'pcadapt' provides statistical tools for outlier detection based on
Principal Component Analysis. Implements the method described in (Luu, 2016)
<DOI:10.1111/1755-0998.12592> and later revised in (Privé, 2020)
<DOI:10.1093/molbev/msaa053>.

Florian Privé

pcadapt

Fast Principal Component Analysis for Outlier Detection

Keurcien Luu

Michael Blum

Eric Bazin

Nicolas Duforet-Frebourg

writeBed function

<dl><dt>file</dt>
<dd>A pcadapt or lfmm file.</dd>
<dt>is.pcadapt</dt>
<dd>a boolean value.</dd></dl>

Arguments

Write PLINK files — writeBed

<dl>

<dt>file</dt>
<dd>A pcadapt or lfmm file.</dd>


<dt>is.pcadapt</dt>
<dd>a boolean value.</dd>

</dl>

writeBed: Write PLINK files

Description

Usage

Value

Arguments