ped2pcadapt

<code>ped2pcadapt</code> converts <code>ped</code> files to the format <code>pcadapt</code>.

internal

Methods to detect genetic markers involved in biological
adaptation. 'pcadapt' provides statistical tools for outlier detection based on
Principal Component Analysis. Implements the method described in (Luu, 2016)
<DOI:10.1111/1755-0998.12592> and later revised in (Privé, 2020)
<DOI:10.1093/molbev/msaa053>.

Florian Privé

pcadapt

Fast Principal Component Analysis for Outlier Detection

Keurcien Luu

Michael Blum

Eric Bazin

Nicolas Duforet-Frebourg

ped2pcadapt function

<dl><dt>input</dt>
<dd>a character string specifying the name of the file to be converted.</dd>
<dt>output</dt>
<dd>a character string specifying the name of the output file.</dd></dl>

Arguments

Convert ped files — ped2pcadapt

<dl>

<dt>input</dt>
<dd>a character string specifying the name of the file to be converted.</dd>


<dt>output</dt>
<dd>a character string specifying the name of the output file.</dd>

</dl>

ped2pcadapt: Convert ped files

Description

Usage

Arguments