pcds (version 0.1.2)

IncMatPEtetra: Incidence matrix for Proportional Edge Proximity Catch Digraphs (PE-PCDs) - one tetrahedron case

Description

Returns the incidence matrix for the PE-PCD whose vertices are the given 3D numerical data set, dat, in the tetrahedron $th=T(v=1,v=2,v=3,v=4)$.

PE proximity regions are constructed with respect to tetrahedron th with expansion parameter $r\ge 1$ and vertex regions are based on the center M which is circumcenter ("CC") or center of mass ("CM") of th with default="CM". Loops are allowed, so the diagonal entries are all equal to 1.

See also (ceyhan:Phd-thesis,ceyhan:comp-geo-2010;textualpcds).

Usage

IncMatPEtetra(dat, th, r, M = "CM")

Arguments

dat

A set of 3D points which constitute the vertices of PE-PCD.

th

Four 3D points, stacked row-wise, each row representing a vertex of the tetrahedron.

r

A positive real number which serves as the expansion parameter in PE proximity region; must be $\ge 1$.

M

The center to be used in the construction of the vertex regions in the tetrahedron, th. Currently it only takes "CC" for circumcenter and "CM" for center of mass; default="CM".

Value

Incidence matrix for the PE-PCD with vertices being 3D data set, dat, in the tetrahedron th with vertex regions based on circumcenter or center of mass

References

See Also

IncMatPEtri, IncMatPE1D, and IncMatPEMT

Examples

# NOT RUN {
A<-c(0,0,0); B<-c(1,0,0); C<-c(1/2,sqrt(3)/2,0); D<-c(1/2,sqrt(3)/6,sqrt(6)/3)
tetra<-rbind(A,B,C,D)
n<-10

dat<-runif.tetra(n,tetra)$g  #try also dat<-c(.5,.5,.5)

M<-"CM"  #try also M<-"CC"
r<-1.5

IM<-IncMatPEtetra(dat,tetra,r=1.25)  #uses the default M="CM"
IM<-IncMatPEtetra(dat,tetra,r=1.25,M)
IM
dom.greedy(IM)
IndUBdom(IM,3)
dom.exact(IM)  #this might take a long time for large n

IncMatPEtetra(dat,tetra,r=1.5)
IncMatPEtetra(dat,tetra,r=2)

r<-2
IncMatPEtetra(dat,tetra,r,M)

dat.fr<-data.frame(a=dat)
IncMatPEtetra(dat.fr,tetra,r,M)

dat.fr<-data.frame(a=tetra)
IncMatPEtetra(dat,dat.fr,r,M)
# }
# NOT RUN {
# }