pcev (version 2.2.2)

permutePval: Permutation p-value

Description

Computes a p-value using a permutation procedure.

Usage

permutePval(pcevObj, ...)
# S3 method for default
permutePval(pcevObj, ...)
# S3 method for PcevClassical
permutePval(pcevObj, shrink, index, nperm, ...)
# S3 method for PcevBlock
permutePval(pcevObj, shrink, index, nperm, ...)
# S3 method for PcevSingular
permutePval(pcevObj, shrink, index, nperm, ...)

Arguments

pcevObj

A pcev object of class PcevClassical or PcevSingular PcevBlock

...

Extra parameters.

shrink

Should we use a shrinkage estimate of the residual variance?

index

If pcevObj is of class PcevBlock, index is a vector describing the block to which individual response variables correspond.

nperm

The number of permutations to perform.