Learn R Programming

pcgen (version 0.2.0)

Reconstruction of Causal Networks for Data with Random Genetic Effects

Description

Implements the pcgen algorithm, which is a modified version of the standard pc-algorithm, with specific conditional independence tests and modified orientation rules. pcgen extends the approach of Valente et al. (2010) with reconstruction of direct genetic effects.

Copy Link

Version

Install

install.packages('pcgen')

Monthly Downloads

161

Version

0.2.0

License

GPL-3

Maintainer

Pariya Behrouzi

Last Published

February 18th, 2019

Functions in pcgen (0.2.0)

pcgenTest

The conditional independence test in pcgen
simdata

Simulated data
pcgen

Causal inference with genetic effects
pcgenFast

pcgen with residual-based screening
checkG

Check for consistency in genetic effects
gencovTest

Estimate genetic covariances between all pairs of traits, and test their significance
getResiduals

Residuals from the GBLUP
pcRes

The pc algorithm applied to residuals