aor.data.frame

plot.AOR

Calculate Abundance-occupancy_relationship
Plot a AOR

Provides a comprehensive suite of tools for analyzing omics data. It includes
functionalities for alpha diversity analysis, beta diversity analysis,
differential abundance analysis, community assembly analysis, visualization of
phylogenetic tree, and functional enrichment analysis. With a progressive
approach, the package offers a range of analysis methods to explore and understand
the complex communities. It is designed to support researchers and practitioners
in conducting in-depth and professional omics data analysis.

Peng Chen

pctax

Professional Comprehensive Omics Data Analysis

aor function

<dl><dt>otutab</dt>
<dd>otutab</dd>
<dt>...</dt>
<dd>add</dd>
<dt>top_r</dt>
<dd>percentage of top relative abundance</dd>
<dt>ocup_n</dt>
<dd>percentage of top occupied</dd>
<dt>special_n</dt>
<dd>how many occupancy define as specialists</dd>
<dt>x</dt>
<dd>AOR object</dd></dl>

Arguments

Calculate Abundance-occupancy_relationship — aor

<dl>

<dt>otutab</dt>
<dd>otutab</dd>


<dt>...</dt>
<dd>add</dd>


<dt>top_r</dt>
<dd>percentage of top relative abundance</dd>


<dt>ocup_n</dt>
<dd>percentage of top occupied</dd>


<dt>special_n</dt>
<dd>how many occupancy define as specialists</dd>


<dt>x</dt>
<dd>AOR object</dd>

</dl>

aor: Calculate Abundance-occupancy_relationship

Description

Usage

Value

Arguments

References

Examples