mat_dist

Provides a comprehensive suite of tools for analyzing omics data. It includes
functionalities for alpha diversity analysis, beta diversity analysis,
differential abundance analysis, community assembly analysis, visualization of
phylogenetic tree, and functional enrichment analysis. With a progressive
approach, the package offers a range of analysis methods to explore and understand
the complex communities. It is designed to support researchers and practitioners
in conducting in-depth and professional omics data analysis.

Peng Chen

pctax

Professional Comprehensive Omics Data Analysis

mat_dist function

<dl><dt>otutab</dt>
<dd>an otutab data.frame, samples are columns, taxs are rows.</dd>
<dt>method</dt>
<dd>Dissimilarity index, partial match to "bray", "euclidean"...see <code>vegdist;unifrac</code></dd>
<dt>spe_nwk</dt>
<dd>a phylo tree if use unifrac...</dd></dl>

Arguments

Calculate distance for otutab — mat_dist

<dl>

<dt>otutab</dt>
<dd>an otutab data.frame, samples are columns, taxs are rows.</dd>


<dt>method</dt>
<dd>Dissimilarity index, partial match to "bray", "euclidean"...see <code>vegdist;unifrac</code></dd>


<dt>spe_nwk</dt>
<dd>a phylo tree if use unifrac...</dd>

</dl>

mat_dist: Calculate distance for otutab

Description

Usage

Value

Arguments

Examples