pre_fastp

Prepare the result from fastp (.json file)

Provides a comprehensive suite of tools for analyzing omics data. It includes
functionalities for alpha diversity analysis, beta diversity analysis,
differential abundance analysis, community assembly analysis, visualization of
phylogenetic tree, and functional enrichment analysis. With a progressive
approach, the package offers a range of analysis methods to explore and understand
the complex communities. It is designed to support researchers and practitioners
in conducting in-depth and professional omics data analysis.

Peng Chen

pctax

Professional Comprehensive Omics Data Analysis

pre_fastp function

<dl><dt>jsonfiles</dt>
<dd>the directory contains .json file</dd>
<dt>prefix</dt>
<dd>default c("Raw","Clean"), for the before filtering and after filtering.</dd></dl>

Arguments

Prepare the result from fastp (.json file) — pre_fastp

<dl>

<dt>jsonfiles</dt>
<dd>the directory contains .json file</dd>


<dt>prefix</dt>
<dd>default c("Raw","Clean"), for the before filtering and after filtering.</dd>

</dl>

pre_fastp: Prepare the result from fastp (.json file)

Description

Usage

Value

Arguments