pctax (version 0.1.3)

grap_p_test: Performs graph-based permutation tests

Description

Performs graph-based permutation tests

Usage

grap_p_test(otutab, metadata, group = "Group", nperm = 999, ...)

Value

ggplot

Arguments

otutab

an otutab data.frame, samples are columns, taxs are rows.

metadata

metadata

group

one group name in columns of metadata

nperm

numbers of permutations to perform

...

additional

Examples

# \donttest{
if (requireNamespace("phyloseqGraphTest") && requireNamespace("phyloseq")) {
  data(otutab, package = "pcutils")
  grap_p_test(otutab, metadata, "Group")
}
# }