pctax (version 0.1.3)

name_or_id2df: Transfer taxon name or taxid to the lineage dataframe

Description

Transfer taxon name or taxid to the lineage dataframe

Usage

name_or_id2df(
  name_or_id,
  mode = "name",
  add_prefix = TRUE,
  fill_miss_rank = TRUE,
  data_dir = NULL
)

Value

dataframe

Arguments

name_or_id

name or taxid

mode

"id" or "name"

add_prefix

add_prefix

fill_miss_rank

fill_miss_rank

data_dir

directory containing nodes.dmp and names.dmp (default "/Users/asa/.taxonkit")

See Also

Other Rtaxonkit: check_taxonkit(), download_taxonkit_dataset(), install_taxonkit(), taxonkit_filter(), taxonkit_lca(), taxonkit_lineage(), taxonkit_list(), taxonkit_name2taxid(), taxonkit_reformat()

Examples

if (FALSE) {
name_or_id2df(c("Homo sapiens", "Akkermansia muciniphila ATCC BAA-835"))
}