pc_otu

Provides a comprehensive suite of tools for analyzing omics data. It includes functionalities for alpha diversity analysis, beta
diversity analysis, differential abundance analysis, community assembly analysis, visualization of phylogenetic tree, and
functional enrichment analysis. With a progressive approach, the package offers a range of analysis methods to explore and
understand the complex communities. It is designed to support researchers and practitioners in conducting in-depth and
professional omics data analysis.

Peng Chen

pctax

Professional Comprehensive Omics Data Analysis

pc_otu function

<dl><dt>otutab</dt>
<dd>an otutab data.frame, samples are columns, taxs are rows.</dd>
<dt>metadata</dt>
<dd>a metadata data.frame, samples are rows</dd>
<dt>taxonomy</dt>
<dd>a taxomomy data.frame, look out the rowname of taxonomy and otutab should matched!</dd>
<dt>...</dt>
<dd>add</dd></dl>

Arguments

Create a pc_otu class object — pc_otu

<dl>

<dt>otutab</dt>
<dd>an otutab data.frame, samples are columns, taxs are rows.</dd>


<dt>metadata</dt>
<dd>a metadata data.frame, samples are rows</dd>


<dt>taxonomy</dt>
<dd>a taxomomy data.frame, look out the rowname of taxonomy and otutab should matched!</dd>


<dt>...</dt>
<dd>add</dd>

</dl>

pc_otu: Create a pc_otu class object

Description

Usage

Value

Arguments

Examples