pctax (version 0.1.3)

rare_curve_species: Rare the species

Description

Rare the species

Usage

rare_curve_species(
  otutab,
  step = 2000,
  method = "richness",
  mode = 2,
  reps = 3,
  threads = 1,
  verbose = TRUE
)

Value

ggplot

Arguments

otutab

otutab

step

default 2000

method

one of "richness","chao1","ace","gc","shannon","simpson","pd","pielou"

mode

1 for little table, 2 for big

reps

reps

threads

use how many threads to calculate (default:1)

verbose

verbose

Examples

data(otutab, package = "pcutils")
a <- rare_curve_species(otutab, mode = 1)
plot(a)