load_mpa_df

Load a metaphlan format data.frame

Provides a comprehensive suite of tools for analyzing omics data. It includes
functionalities for alpha diversity analysis, beta diversity analysis, differential
abundance analysis, community assembly analysis, visualization of phylogenetic tree, and
functional enrichment analysis. With a progressive approach, the package offers a range of
analysis methods to explore and understand the complex communities. It is designed to
support researchers and practitioners in conducting in-depth and professional omics data
analysis.

Chen Peng

pctax

Professional Comprehensive Omics Data Analysis

load_mpa_df function

<dl><dt>mpa_df</dt>
<dd>metaphlan format data.frame, rownames are taxon, all value are numeric.</dd>
<dt>sum_unidentified</dt>
<dd>logical, whether to sum the unidentified reads to the correspond level.</dd>
<dt>rank_prefixes</dt>
<dd>a named vector of rank prefixes, default is <code>pc_rank_prefixes</code>.</dd></dl>

Arguments

Load a metaphlan format data.frame — load_mpa_df

<dl>

<dt>mpa_df</dt>
<dd>metaphlan format data.frame, rownames are taxon, all value are numeric.</dd>


<dt>sum_unidentified</dt>
<dd>logical, whether to sum the unidentified reads to the correspond level.</dd>


<dt>rank_prefixes</dt>
<dd>a named vector of rank prefixes, default is <code>pc_rank_prefixes</code>.</dd>

</dl>

load_mpa_df: Load a metaphlan format data.frame

Description

Usage

Value

Arguments