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pdInfoBuilder (version 1.36.0)

Platform Design Information Package Builder

Description

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

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Version

Version

1.36.0

License

Artistic-2.0

Maintainer

Benilton Carvalho

Last Published

February 15th, 2017

Functions in pdInfoBuilder (1.36.0)

NgsTilingPDInfoPkgSeed-class

Class "NgsTilingPDInfoPkgSeed"
NgsExpressionPDInfoPkgSeed-class

Class "NgsExpressionPDInfoPkgSeed"
cdf2table

Helper functions to assist the creation of an annotation package for a generic array
AffySNPCNVPDInfoPkgSeed-class

Class "AffySNPCNVPDInfoPkgSeed"
AffySNPPDInfoPkgSeed-class

Class "AffySNPPDInfoPkgSeed"
AffyExpressionPDInfoPkgSeed-class

Class "AffyExpressionPDInfoPkgSeed"
AffySTPDInfoPkgSeed-class

Class "AffySTPDInfoPkgSeed" for the Sense Target gene-level array
AffyTilingPDInfoPkgSeed-class

Class "AffyTilingPDInfoPkgSeed"
AffySNPPDInfoPkgSeed2-class

Class "AffySNPPDInfoPkgSeed2"
chipName

Return an Official Chip/Platform Name
NimbleGenPDInfoPkgSeed-class

Class "NimbleGenPDInfoPkgSeed"
makePdInfoPackage

Create a Platform Design Info Package
getGeometry

Return the Chip/Platform geometry
AffySNPCNVPDInfoPkgSeed2-class

Class "AffySNPCNVPDInfoPkgSeed2"