annotationParamsDiagnostic,peakPantheRAnnotation-method

annotationParamsDiagnostic

(peakPantheRAnnotation) Annotated peakPantheRAnnotation object

object

(bool) If TRUE message progress of uROI and FIR calculation

verbose

Set uROI and FIR based on annotation results
Set updated ROI (uROI) and Fallback Integration Regions (FIR) based on the annotation results. If the object is not annotated, it is returned untouched. ROI is not modified. If uROI exist they are left untouched, otherwise they are set as the minimum and maximum found peaks limits (+/-5% of ROI in retention time). If FIR are used they are left untouched, otherwise they are set as the median of the found limits (rtMin, rtMax, mzMin, mzMax).

An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files.

Arnaud Wolfer

peakPantheR

Peak Picking and Annotation of High Resolution Experiments

Goncalo Correia

Jake Pearce

annotationParamsDiagnostic,peakPantheRAnnotation-method function

Set uROI and FIR based on annotation results
Set updated ROI (uROI) and Fallback Integration Regions (FIR) based on the annotation results. If the object is not annotated, it is returned untouched. ROI is not modified. If uROI exist they are left untouched, otherwise they are set as the minimum and maximum found peaks limits (+/-5% of ROI in retention time). If FIR are used they are left untouched, otherwise they are set as the median of the found limits (rtMin, rtMax, mzMin, mzMax). — annotationParamsDiagnostic,peakPantheRAnnotation-method

Set uROI and FIR based on annotation results
Set updated ROI (uROI) and Fallback Integration Regions (FIR) based on the annotation results. If the object is not annotated, it is returned untouched. ROI is not modified. If uROI exist they are left untouched, otherwise they are set as the minimum and maximum found peaks limits (+/-5% of ROI in retention time). If FIR are used they are left untouched, otherwise they are set as the median of the found limits (rtMin, rtMax, mzMin, mzMax).

Description

Usage

Arguments

Value