integrateFIR

an <code><a rd-options="MSnbase" href="/link/OnDiskMSnExp-class?package=peakPantheR&version=1.2.0&to=MSnbase" data-mini-rdoc="MSnbase::OnDiskMSnExp-class">OnDiskMSnExp-class</a></code>

rawSpec

(data.frame) Fallback Integration Regions (FIR) to integrate when a feature is not found. Compounds as row are identical to the targeted features, columns are <code>rtMin</code> (float in seconds), <code>rtMax</code> (float in seconds), <code>mzMin</code> (float), <code>mzMax</code> (float)

a <code>data.frame</code> as generated by <code><a rd-options="" href="/link/findTargetFeatures?package=peakPantheR&version=1.2.0" data-mini-rdoc="peakPantheR::findTargetFeatures">findTargetFeatures</a></code>, with features as rows and peak properties as columns. The following columns are mandatory: <code>found</code>, <code>is_filled</code>, <code>mz</code>, <code>mzMin</code>, <code>mzMax</code>, <code>rt</code>, <code>rtMin</code>, <code>rtMax</code>, <code>peakArea</code>, <code>maxIntMeasured</code>, <code>maxIntPredicted</code>.

foundPeakTable

verbose

Integrate region defined in FIR if a feature is not found

An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files.

Arnaud Wolfer

peakPantheR

Peak Picking and Annotation of High Resolution Experiments

Goncalo Correia

Jake Pearce

integrateFIR function

an <code><a rd-options='MSnbase' href='OnDiskMSnExp-class'>OnDiskMSnExp-class</a></code>

a <code>data.frame</code> as generated by <code><a rd-options='' href='findTargetFeatures'>findTargetFeatures</a></code>, with features as rows and peak properties as columns. The following columns are mandatory: <code>found</code>, <code>is_filled</code>, <code>mz</code>, <code>mzMin</code>, <code>mzMax</code>, <code>rt</code>, <code>rtMin</code>, <code>rtMax</code>, <code>peakArea</code>, <code>maxIntMeasured</code>, <code>maxIntPredicted</code>.

integrateFIR: Integrate fallback integration regions

Description

Usage

Arguments

Value