outputAnnotationParamsCSV()
) and a diagnostic plot per fitted compound (as generated by annotationDiagnosticMultiplot()
) if savePlots
is TRUESave to disk the annotation parameters as CSV and a diagnostic plot per fitted compound
Save to disk the annotation parameters as CSV (as generated by outputAnnotationParamsCSV()
) and a diagnostic plot per fitted compound (as generated by annotationDiagnosticMultiplot()
) if savePlots
is TRUE
# S4 method for peakPantheRAnnotation
outputAnnotationDiagnostic(object, saveFolder,
savePlots = TRUE, sampleColour = NULL, verbose = TRUE, ...)
(peakPantheRAnnotation) Annotated peakPantheRAnnotation object
(str) Path of folder where annotationParameters_summary.csv and plots will be saved
(bool) If TRUE save a diagnostic plot for each compound
(str) NULL or vector colour for each sample
(bool) If TRUE message progress
Additional parameters for plotting i.e. sampling
for the number of points to employ when plotting fittedCurve
None