peakPantheR (version 1.2.0)

outputAnnotationDiagnostic,peakPantheRAnnotation-method: Save to disk the annotation parameters as CSV and a diagnostic plot per fitted compound Save to disk the annotation parameters as CSV (as generated by outputAnnotationParamsCSV()) and a diagnostic plot per fitted compound (as generated by annotationDiagnosticMultiplot()) if savePlots is TRUE

Description

Save to disk the annotation parameters as CSV and a diagnostic plot per fitted compound Save to disk the annotation parameters as CSV (as generated by outputAnnotationParamsCSV()) and a diagnostic plot per fitted compound (as generated by annotationDiagnosticMultiplot()) if savePlots is TRUE

Usage

# S4 method for peakPantheRAnnotation
outputAnnotationDiagnostic(object, saveFolder,
  savePlots = TRUE, sampleColour = NULL, verbose = TRUE, ...)

Arguments

object

(peakPantheRAnnotation) Annotated peakPantheRAnnotation object

saveFolder

(str) Path of folder where annotationParameters_summary.csv and plots will be saved

savePlots

(bool) If TRUE save a diagnostic plot for each compound

sampleColour

(str) NULL or vector colour for each sample

verbose

(bool) If TRUE message progress

...

Additional parameters for plotting i.e. sampling for the number of points to employ when plotting fittedCurve

Value

None