outputAnnotationResult,peakPantheRAnnotation-method: Save to disk all annotation results as csv files Save to disk all annotation results as `annotationName_ ... .csv` files: compound metadata (`cpdMetadata`, `cpdID`, `cpdName`) and spectra metadata (`spectraMetadata`, `acquisitionTime`, `TIC`), summary of fit (ratio of peaks found: `ratio_peaks_found`, ratio of peaks filled: `ratio_peaks_filled`, mean ppm_error: `ppm_error`, mean rt_dev_sec: `rt_dev_sec`), and a file for each column of `peakTables` (with samples as rows and compounds as columns)

Description

Save to disk all annotation results as csv files Save to disk all annotation results as annotationName_ ... .csv files: compound metadata (cpdMetadata, cpdID, cpdName) and spectra metadata (spectraMetadata, acquisitionTime, TIC), summary of fit (ratio of peaks found: ratio_peaks_found, ratio of peaks filled: ratio_peaks_filled, mean ppm_error: ppm_error, mean rt_dev_sec: rt_dev_sec), and a file for each column of peakTables (with samples as rows and compounds as columns)

Usage

# S4 method for peakPantheRAnnotation
outputAnnotationResult(object, saveFolder,
  annotationName = "annotationResult", verbose = TRUE)

Arguments

object

(peakPantheRAnnotation) Annotated peakPantheRAnnotation object

saveFolder

(str) Path of folder where the annotation result csv will be saved

annotationName

(str) name of annotation to use in the saved csv

verbose

(bool) If TRUE message progress

Value

None