saveSingleFileMultiEIC

(list) a list of <code>data.frame</code> of raw data points for each ROI (retention time "rt", mass "mz" and intensity "int" (as column) of each raw data points (as row)).

ROIsDataPoint

(list) a list of <code>peakPantheR_curveFit</code> or NA for each ROI

curveFit

(data.frame) <code>data.frame</code> as generated by <code><a rd-options="" href="/link/findTargetFeatures?package=peakPantheR&version=1.2.0" data-mini-rdoc="peakPantheR::findTargetFeatures">findTargetFeatures</a></code>, with features as rows and peak properties as columns. The following columns are mandatory: <code>cpdID</code>, <code>cpdName</code>, <code>rt</code>, <code>rtmin</code>, <code>rtmax</code>, <code>mzmin</code>, <code>mzmax</code>.

foundPeakTable

(str) Full path to save a .png of all ROI EICs , expect <code>'filepath/filename.png'</code>.

savePath

(float) Width in cm for a single ROI plot (if more than one plot in total, 2 columns will be used). dpi set to a 100.

width

(float) height in a cm for a single ROI plot. dpi set to 100

height

verbose

Plot and save a <code>.png</code> of all ROI (x is RT, y is intensity), with the matching detected peak rt and peakwidth under it.

An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files.

Arnaud Wolfer

peakPantheR

Peak Picking and Annotation of High Resolution Experiments

Goncalo Correia

Jake Pearce

saveSingleFileMultiEIC function

(data.frame) <code>data.frame</code> as generated by <code><a rd-options='' href='findTargetFeatures'>findTargetFeatures</a></code>, with features as rows and peak properties as columns. The following columns are mandatory: <code>cpdID</code>, <code>cpdName</code>, <code>rt</code>, <code>rtmin</code>, <code>rtmax</code>, <code>mzmin</code>, <code>mzmax</code>.

saveSingleFileMultiEIC: Save to disk a plot of all ROI EIC and detected feature range

Description

Usage

Arguments

Value