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pedigree (version 1.4)

Pedigree functions

Description

Pedigree related functions

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Version

Install

install.packages('pedigree')

Monthly Downloads

2,344

Version

1.4

License

GPL (>= 2)

Maintainer

Albart Coster

Last Published

November 3rd, 2013

Functions in pedigree (1.4)

makeAinv

Makes inverted A matrix for a pedigree
trimPed

Function to trim a pedigree based on available data
pedigree-package

Package to deal with pedigree data
calcInbreeding

Calculates inbreeding coefficients for individuals in a pedigree.
add.Inds

Function to add missing individuals to a pedigree
calcG

Function to calculate a relationship matrix from marker data (usually allele count data), G matrix.
gblup

Function to calculate breeding values using an animal model and a relationship matrix calculated from the markers (G matrix)
countOff

Function that counts the number of offspring (and following generations for each individual in a pedigree.
blup

Function to calculate breeding values using an animal model
orderPed

Orders a pedigree
makeA

Makes the A matrix for a part of a pedigree
countGen

Count generation number for each individual in a pedigree.