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pedigree (version 1.4)
Pedigree functions
Description
Pedigree related functions
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Version
1.4.2
1.4.1
1.4
1.3.2
1.3.1
1.2
1.1
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Install
install.packages('pedigree')
Monthly Downloads
1,667
Version
1.4
License
GPL (>= 2)
Maintainer
Albart Coster
Last Published
November 3rd, 2013
Functions in pedigree (1.4)
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makeAinv
Makes inverted A matrix for a pedigree
trimPed
Function to trim a pedigree based on available data
pedigree-package
Package to deal with pedigree data
calcInbreeding
Calculates inbreeding coefficients for individuals in a pedigree.
add.Inds
Function to add missing individuals to a pedigree
calcG
Function to calculate a relationship matrix from marker data (usually allele count data), G matrix.
gblup
Function to calculate breeding values using an animal model and a relationship matrix calculated from the markers (G matrix)
countOff
Function that counts the number of offspring (and following generations for each individual in a pedigree.
blup
Function to calculate breeding values using an animal model
orderPed
Orders a pedigree
makeA
Makes the A matrix for a part of a pedigree
countGen
Count generation number for each individual in a pedigree.