allGenotypes

An autosomal marker with <code>n</code> alleles has <code>choose(n+1, 2)</code> possible
unordered genotypes. This function returns these as rows in a
matrix.

An implementation of the Elston-Stewart algorithm for
calculating pedigree likelihoods given genetic marker data (Elston and
Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is
extended to allow inbred founders. 'pedprobr' is part of the
'pedsuite', a collection of packages for pedigree analysis in R. In
particular, 'pedprobr' depends on 'pedtools' for pedigree
manipulations and 'pedmut' for mutation modelling. For more
information, see 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).

Magnus Vigeland

pedprobr

Probability Computations on Pedigrees

Magnus Dehli Vigeland

allGenotypes function

<dl><dt>n</dt>
<dd>A positive integer.</dd></dl>

Arguments

Genotype matrix — allGenotypes

<dl>

<dt>n</dt>
<dd>A positive integer.</dd>

</dl>

allGenotypes: Genotype matrix

Description

Usage

Value

Arguments

Examples