Compare Two Haplotype Networks
Build Loci Object From Matrix of Alleles
Analysis of Molecular Variance
Bind Loci Objects
Ramos-Onsins--Rozas Test of Neutrality
Information From VCF Files
Manipulate Geographic Coordinates
Haplotype Extraction and Frequencies
Multi-Locus Linkage Disequilibrium
Mismatch Distribution
Hamming Distance
Edit Allelic Data with R's Data Editor
Minimum Spanning Tree and Network
Missing Allelic Data
Edit the Layout of a Haplotype Network
Tajima Relative Rate Test of Molecular Clock
Print and Summaries of Loci Objects
Test of the Neutral Mutation Hypothesis
Population Parameter THETA From Micro-Satellites
Population Parameter THETA using Segregating Sites
Conversion Among Allelic Data Classes
Comparison Between Two Haplotypes
Jaguar Micro-Satellites
Median-Joining Network
Haplotype Extraction and Frequencies From Allelic Data
Nucleotide Diversity
Population and Evolutionary Genetics Analysis System
Site Frequency Spectrum
Write Allelic Data Files
Subsetting and Filtering Haplotypes
F-Statistics
Linkage Disequilibrium
Haplotype Frequencies With a Covariate
Haplotype Networks
Geodesic Distances
Heterozygosity at a Locus Using Gene Frequencies
Test of Hardy--Weinberg Equilibrium
Population Parameter THETA using Homozygosity
Plot Networks With MDS Layout
Read Genetix Data Files
Read Allelic Data Files
Read Variant Calling Format Files
Population Parameter THETA using Expected Number of Alleles
Population Parameter THETA Using Genealogy
Utily Functions for pegas