pegas-package

pegas

pegas provides functions for the analysis of allelic data and of
 haplotype data from DNA sequences. It requires and complements two
 other R-packages: ape and adegenet.
The complete list of functions can be displayed with
 <code>library(help = pegas)</code>.
More information on pegas can be found at
 <a href="http://ape-package.ird.fr/pegas.html">http://ape-package.ird.fr/pegas.html</a>.

package

Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.

Emmanuel Paradis

Population and Evolutionary Genetics Analysis System

Thibaut Jombart

Zhian N. Kamvar

Brian Knaus

Klaus Schliep

Alastair Potts

David Winter

pegas-package function

pegas provides functions for the analysis of allelic data and of
 haplotype data from DNA sequences. It requires and complements two
 other R-packages: ape and adegenet.
The complete list of functions can be displayed with
 <code>library(help = pegas)</code>.
More information on pegas can be found at
 <a href='http://ape-package.ird.fr/pegas.html'>http://ape-package.ird.fr/pegas.html</a>.

Population and Evolutionary Genetics Analysis System — pegas-package

pegas-package: Population and Evolutionary Genetics Analysis System

Description

Arguments