These functions change the graphical options to plot haplotype networks.
getHaploNetOptions()
setHaploNetOptions(...)option(s) and value(s) to be changed (separated by commas if several).
getHaploNetOptions returns a list of options. The other
function returns nothing.
The options are listed below with their default values. Most of these
values use the standard R graphical paramters (see
par).
bg = "transparent"the background colour of the plot.
labels = TRUEwhether to show the haplotype labels.
labels.cex = 1size of the haplotype labels.
labels.font = 2font of the haplotype labels.
link.color = "black"colour of the links.
link.type = 1type of line for the links.
link.type.alt = 2type of lines for the alternative links.
link.width = 1line width for the links.
link.width.alt = 1line width for the alternative links.
haplotype.inner.color = "white"colour used inside the haplotype symbols.
haplotype.outer.color = "black"colour used for the border of the haplotype symbols.
mutations.cex = 1size of the mutation annotations.
mutations.font = 1font of the mutation annotations.
mutations.frame.background = "#0000FF4D"transparent blue.
mutations.frame.border = "black"
mutations.text.color = 1colour of the mutation annotations.
mutations.arrow.color = "black"colour of the arrow pointing to the link.
mutations.arrow.type = "triangle"type of the above arrow.
mutations.sequence.color = "#BFBFBF4D"transparent grey.
mutations.sequence.end = "round"possible choices: "round",
"butt", or "square" (or alternatively 0, 1, or 2).
mutations.sequence.length = 0.3the length of the segment showing the sequence as fraction of the graphical window.
mutations.sequence.width = 5thickness of this segment.
pie.outer.color = "black"
pie.inner.segments.color = "black"
pie.colors.function = rainbowfunctio used to define colours for the frequencies.
scale.ratio = 1
show.mutation = 1
# NOT RUN {
getHaploNetOptions()
# }
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