na.omit.loci

nullAlleles2NA

The first function is a method of the generic function
 <code><a href="/link/na.omit?package=pegas&version=1.4" data-mini-rdoc="pegas::na.omit">na.omit</a></code>.
<code>nullAlleles2NA</code> changes all genotypes with at least one `null'
 allele (that is among the values in <code>na.alleles</code>) into <code>NA</code>.

manip

Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.

Emmanuel Paradis

pegas

Population and Evolutionary Genetics Analysis System

Thibaut Jombart

Zhian N. Kamvar

Brian Knaus

Klaus Schliep

Alastair Potts

David Winter

na.omit.loci function

<dl> <dt>object</dt>
<dd>an object of class <code>"loci"</code>.</dd> <dt>na.alleles</dt>
<dd>a vector of character strings giving the alleles
 to be treated as missing data.</dd> <dt>...</dt>
<dd>(unused)</dd></dl>

Arguments

Author

The first function is a method of the generic function
 <code><a href='https://rdrr.io/r/stats/na.fail.html'>na.omit</a></code>.
<code>nullAlleles2NA</code> changes all genotypes with at least one `null'
 allele (that is among the values in <code>na.alleles</code>) into <code>NA</code>.

Missing Allelic Data — na.omit.loci

<dl>

 <dt>object</dt>
<dd>an object of class <code>"loci"</code>.</dd>

 <dt>na.alleles</dt>
<dd>a vector of character strings giving the alleles
 to be treated as missing data.</dd>

 <dt>...</dt>
<dd>(unused)</dd>

</dl>

na.omit.loci: Missing Allelic Data

Description

Usage

Value

Arguments

Author

Details

Examples