prior_params_default

Default parameters for the prior distributions used in the <code>makePriors</code> function.

datasets

Implements statistical methods for estimating disease penetrance in
family-based studies. Penetrance refers to the probability of disease§
manifestation in individuals carrying specific genetic variants. The package
provides tools for age-specific penetrance estimation, handling missing data,
and accounting for ascertainment bias in family studies.
Cite as: Kubista, N., Braun, D. & Parmigiani, G. (2024) <doi:10.48550/arXiv.2411.18816>.

Nicolas Kubista

penetrance

Methods for Penetrance Estimation in Family-Based Studies

BayesMendel Lab

prior_params_default function

A list of prior distribution parameters
A list with the following components:<dl>
<dt>asymptote</dt>
<dd>A list with components <code>g1</code> and <code>g2</code>, default values for the asymptote parameters.</dd><dt>threshold</dt>
<dd>A list with components <code>min</code> and <code>max</code>, default values for the threshold parameters.</dd><dt>median</dt>
<dd>A list with components <code>m1</code> and <code>m2</code>, default values for the median parameters.</dd><dt>first_quartile</dt>
<dd>A list with components <code>q1</code> and <code>q2</code>, default values for the first quartile parameters.</dd>
</dl>

Format

Default Prior Parameters — prior_params_default

A list of prior distribution parameters
A list with the following components:<dl>
<dt>asymptote</dt>
<dd>A list with components <code>g1</code> and <code>g2</code>, default values for the asymptote parameters.</dd>

<dt>threshold</dt>
<dd>A list with components <code>min</code> and <code>max</code>, default values for the threshold parameters.</dd>

<dt>median</dt>
<dd>A list with components <code>m1</code> and <code>m2</code>, default values for the median parameters.</dd>

<dt>first_quartile</dt>
<dd>A list with components <code>q1</code> and <code>q2</code>, default values for the first quartile parameters.</dd>


</dl>

prior_params_default: Default Prior Parameters

Description

Usage

Arguments

Format