makeNewickRec

node

A separator for haplotype names in the same clade. See the arguments in
<code><a rd-options="" href="/link/reconstructPP?package=perfectphyloR&version=0.2.1" data-mini-rdoc="perfectphyloR::reconstructPP">reconstructPP</a></code>.

Build the character string of nodes and haplotypes in Newick format

internal

Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) <bioRxiv:10.1101/674523>.

Charith Karunarathna

perfectphyloR

Reconstruct Perfect Phylogenies from DNA Sequence Data

makeNewickRec function

A separator for haplotype names in the same clade. See the arguments in
<code><a rd-options='' href='reconstructPP'>reconstructPP</a></code>.

makeNewickRec: Build the character string of nodes and haplotypes in Newick format

Description

Usage

Arguments

Examples