perfectphyloR (version 0.2.1)

orderColsAncestry: Utility function needed by orderSNVs

Description

This function orders the compatible SNVs in the window around the focal point by their ancestry.

Usage

orderColsAncestry(M)

Arguments

M

hapMat object with compatible SNVs.

Value

A hapMat object with SNVs ordered according to their ancestry.

Details

This function sorts columns of M as binary numbers in descending order. The first row of M is the first digit of the binary numbers, the second row of M is the second digit, etc. This guarantees that more ancestral SNVs appear before more recent SNVs.

See Also

orderSNVs

Examples

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