tdend

A phylo object containing attributes of the comparator true dendrogram for the example data at
SNV position 975 kilo base pairs.

datasets

Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) <bioRxiv:10.1101/674523>.

Charith Karunarathna

perfectphyloR

Reconstruct Perfect Phylogenies from DNA Sequence Data

tdend function

A phylo object from the ape package containing four attributes:<dl class="dl-horizontal"></dl><dt>edge</dt><dd>A matrix containing the node labels and their child nodes.</dd>
<dt>Nnode</dt><dd>The number of nodes.</dd>
<dt>tip.label</dt><dd>A character vector containing the haplotype labels of the true dendrogram.</dd>
<dt>edge.length</dt><dd>A numeric vector giving the lengths of the branches given by <code>edge</code>.</dd>

tdend: True dendrogram object

Description

Usage

Arguments

Format