drop_tip

This is a weak wrapper around <code>ape</code>'s
<code>drop.tip</code>. Importantly, if asked to drop no species
from a phylogeny, it will just return the phylogeny (not an empty
phylogeny, as <code>drop.tip</code>) will.

Eco-phylogenetic and community phylogenetic analyses.
Keeps community ecological and phylogenetic data matched up and
comparable using 'comparative.comm' objects. Wrappers for common
community phylogenetic indices ('pez.shape', 'pez.evenness',
'pez.dispersion', and 'pez.dissimilarity' metrics). Implementation
of Cavender-Bares (2004) correlation of phylogenetic and
ecological matrices ('fingerprint.regression'). Phylogenetic
Generalised Linear Mixed Models (PGLMMs; 'pglmm') following Ives &
Helmus (2011) and Rafferty & Ives (2013). Simulation of null
assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').

William Pearse

Phylogenetics for the Environmental Sciences

drop_tip function

<dl><dt>tree</dt>
<dd>An <code>phylo</code> object</dd>
<dt>spp</dt>
<dd>A vector of species (one, many, or none) to be removed
from <code>tree</code></dd></dl>

Arguments

Trim a phylogeny — drop_tip

<dl>

<dt>tree</dt>
<dd>An <code>phylo</code> object</dd>


<dt>spp</dt>
<dd>A vector of species (one, many, or none) to be removed
from <code>tree</code></dd>

</dl>

drop_tip: Trim a phylogeny

Description

Usage

Value

Arguments

See Also