AppendBiallelic

Appends an unphased biallelic hardcall variant to a .pgen being written.

A thin wrapper over 'PLINK' 2's core libraries which provides an R
interface for reading .pgen files. A minimal .pvar loader and a basic
.pgen writer are also included. Chang et al. (2015) <doi:10.1186/s13742-015-0047-8>.

Christopher Chang

pgenlibr

'PLINK' 2 Binary (.pgen) Reader

Eric Biggers

Yann Collet

Meta Platforms, Inc. 

Evan Nemerson

Przemyslaw Skibinski

Nick Terrell

AppendBiallelic function

<dl><dt>pgen_writer</dt>
<dd>Object returned by NewPgenWriter().</dd>
<dt>geno</dt>
<dd>Integer or numeric vector of length sample_ct, with values in
{0, 1, 2, NA} indicating the number of ALT allele copies; -9 is also
accepted as a missing-value code. (A buffer filled by ReadHardcalls() is
in this format.)</dd></dl>

Arguments

Appends an unphased biallelic hardcall variant to a .pgen being written. — AppendBiallelic

<dl>

<dt>pgen_writer</dt>
<dd>Object returned by NewPgenWriter().</dd>


<dt>geno</dt>
<dd>Integer or numeric vector of length sample_ct, with values in
{0, 1, 2, NA} indicating the number of ALT allele copies; -9 is also
accepted as a missing-value code. (A buffer filled by ReadHardcalls() is
in this format.)</dd>

</dl>

AppendBiallelic: Appends an unphased biallelic hardcall variant to a .pgen being written.

Description

Usage

Value

Arguments