pgu.reporter

<p>Creates a human readable report file of the pguIMP analysis in odf format via rmarkdown and latex.
This object is used by the shiny based gui and is not for use in individual R-scripts!</p>

Reproducible cleaning of bio-medical laboratory data using methods of visualization,error correction and transformation implemented as interactive R-notebooks.

Sebastian Malkusch

pguIMP

'pguIMP'

Joern Loetsch

pgu.reporter function

<p><a rd-options="R6:R6Class" href="/link/R6%3A%3AR6Class?package=pguIMP&version=0.0.0.3&to=R6%3AR6Class" data-mini-rdoc="R6:R6Class::R6::R6Class">R6::R6Class</a> object.</p>

Format

<p></p><dl class="dl-horizontal">
<dt><code>filename</code></dt><dd><p>Returns the instance variable filename
(character)</p></dd><p></p><p><dt><code>setFilename</code></dt><dd><p>Sets the instance variable filename to name.
(character)</p></dd>
</p></dl><p></p>

Active bindings

<h3>Public methods</h3><p></p><p><ul>
<li><p><a href="/link/pgu.reporter%24new()?package=pguIMP&version=0.0.0.3" data-mini-rdoc="pguIMP::pgu.reporter$new()"><code>pgu.reporter$new()</code></a></p></li>
<li><p><a href="/link/pgu.reporter%24finalize()?package=pguIMP&version=0.0.0.3" data-mini-rdoc="pguIMP::pgu.reporter$finalize()"><code>pgu.reporter$finalize()</code></a></p></li>
<li><p><a href="/link/pgu.reporter%24print()?package=pguIMP&version=0.0.0.3" data-mini-rdoc="pguIMP::pgu.reporter$print()"><code>pgu.reporter$print()</code></a></p></li>
<li><p><a href="/link/pgu.reporter%24write_report()?package=pguIMP&version=0.0.0.3" data-mini-rdoc="pguIMP::pgu.reporter$write_report()"><code>pgu.reporter$write_report()</code></a></p></li>
<li><p><a href="/link/pgu.reporter%24clone()?package=pguIMP&version=0.0.0.3" data-mini-rdoc="pguIMP::pgu.reporter$clone()"><code>pgu.reporter$clone()</code></a></p></li>
</ul>
</p><p></p><h3>Method <code>new()</code></h3><p></p><p>Creates and returns a new <code>pgu.reporter</code> object.
</p><h3>Usage</h3><p></p><p><pre>pgu.reporter$new(name = "character")</pre></p><p></p><h3>Arguments</h3><p></p><p><dl class="dl-horizontal">
<dt><code>name</code></dt><dd><p>Filename of the report pdf.
(character)</p></dd>
</dl></p><p></p><h3>Returns</h3><p></p><p>A new <code>pgu.reporter</code> object.
(pguIMP::pgu.report)</p><p></p><p></p><h3>Method <code>finalize()</code></h3><p></p><p>Clears the heap and
indicates that instance of <code>pgu.reporter</code> is removed from heap.
</p><h3>Usage</h3><p></p><p><pre>pgu.reporter$finalize()</pre></p><p></p><p></p><h3>Method <code>print()</code></h3><p></p><p>Prints instance variables of a <code>pgu.reporter</code> object.
</p><h3>Usage</h3><p></p><p><pre>pgu.reporter$print()</pre></p><p></p><h3>Returns</h3><p></p><p>string</p><p></p><p></p><h3>Method <code>write_report()</code></h3><p></p><p>Writes a report of the pguIMP analysis to a pdf file.
</p><h3>Usage</h3><p></p><p><pre>pgu.reporter$write_report(obj)</pre></p><p></p><h3>Arguments</h3><p></p><p><dl class="dl-horizontal">
<dt><code>obj</code></dt><dd><p>A list of class objects that are passed to the rmarkdown script.</p></dd>
</dl></p><p></p><h3>Returns</h3><p></p><p>t.b.a.</p><p></p><p></p><h3>Method <code>clone()</code></h3><p></p><p>The objects of this class are cloneable with this method.
</p><h3>Usage</h3><p></p><p><pre>pgu.reporter$clone(deep = FALSE)</pre></p><p></p><h3>Arguments</h3><p></p><p><dl class="dl-horizontal">
<dt><code>deep</code></dt><dd><p>Whether to make a deep clone.</p></dd>
</dl></p>

Methods