phangorn (version 2.1.1)

cladePar: Utility function to plot.phylo

Description

cladePar can help you coloring (choosing edge width/type) of clades.

Usage

cladePar(tree, node, edge.color = "red", tip.color = edge.color, edge.width = 1, edge.lty = 1, x = NULL, plot = FALSE, ...)

Arguments

tree

an object of class phylo.

node

the node which is the common ancestor of the clade.

edge.color

see plot.phylo.

tip.color

see plot.phylo.

edge.width

see plot.phylo.

edge.lty

see plot.phylo.

x

the result of a previous call to cladeInfo.

plot

logical, if TRUE the tree is plotted.

...

Further arguments passed to or from other methods.

Value

A list containing the information about the edges and tips.

See Also

plot.phylo

Examples

tree = rtree(10)
plot(tree)
nodelabels()
x = cladePar(tree, 12)
cladePar(tree, 18, "blue", "blue", x=x, plot=TRUE)