phangorn-package

phangorn


Phylogenetic analysis in R (Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
Distance methods & Hadamard conjugation)<p></p><p>The complete list of functions can be displayed with <code>library(help = phangorn)</code>. </p><p>
Further information is available in several vignettes. To show the available 
vignettes in an HTML browser type <code>browseVignettes("phangorn")</code>. 
<table><tr><td>
<code>Trees</code> </td>
</tr><tr><td> Constructing phylogenetic trees (source, pdf) </td>
</tr><tr><td>
<code>phangorn-specials</code> </td>
</tr><tr><td> Advanced features (source, pdf) </td>
</tr><tr><td>
<code>Ancestral</code> </td>
</tr><tr><td> Ancestral sequence reconstruction (source, pdf) </td>
</tr><tr><td>
<code>Networx</code> </td>
</tr><tr><td> Splits and Networx (source, html) </td>
</tr></table>
The first vignette (to display type <code>vignette('Trees')</code>) gives an introduction in phylogenetic analysis with phangorn. The second vignette (phangorn-special) covers more advanced feature like defining special character spaces and things which fit nowhere else. 
More information on <b>phangorn</b> can be found on <a href="http://www.phangorn.org">http://www.phangorn.org</a>. 
</p>

 package

Phylogenetic analysis in R: Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
distance methods and Hadamard conjugation.

Klaus Schliep

Phylogenetic Analysis in R

phangorn-package function


Phylogenetic analysis in R (Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
Distance methods & Hadamard conjugation)

The complete list of functions can be displayed with <code>library(help = phangorn)</code>. 


Further information is available in several vignettes. To show the available 
vignettes in an HTML browser type <code>browseVignettes("phangorn")</code>. 
<table><tr><td>
<code>Trees</code> </td>
</tr><tr><td> Constructing phylogenetic trees (source, pdf) </td>
</tr><tr><td>
<code>phangorn-specials</code> </td>
</tr><tr><td> Advanced features (source, pdf) </td>
</tr><tr><td>
<code>Ancestral</code> </td>
</tr><tr><td> Ancestral sequence reconstruction (source, pdf) </td>
</tr><tr><td>
<code>Networx</code> </td>
</tr><tr><td> Splits and Networx (source, html) </td>
</tr></table>
The first vignette (to display type <code>vignette('Trees')</code>) gives an introduction in phylogenetic analysis with phangorn. The second vignette (phangorn-special) covers more advanced feature like defining special character spaces and things which fit nowhere else. 
More information on <b>phangorn</b> can be found on <a href = 'http://www.phangorn.org'>http://www.phangorn.org</a>. 


phangorn-package: Phylogenetic analysis in R

Description

Arguments

References