phangorn

phangorn-package

<img src="figures/logo.png?package=phangorn&version=2.12.1" style="float: right" alt="logo" width="120">
Allows for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation (Schliep 2011). Offers methods for tree comparison, model selection and visualization of phylogenetic networks as described in Schliep et al. (2017).

internal

Allows for estimation of phylogenetic trees and networks
using Maximum Likelihood, Maximum Parsimony, distance methods and
Hadamard conjugation (Schliep 2011). Offers methods for tree comparison,
model selection and visualization of phylogenetic networks as described in
Schliep et al. (2017).

Klaus Schliep

Phylogenetic Reconstruction and Analysis

Emmanuel Paradis

Leonardo de Oliveira Martins

Alastair Potts

Iris Bardel-Kahr

Tim W. White

Cyrill Stachniss

Michelle Kendall

Keren Halabi

Richel Bilderbeek

Kristin Winchell

Liam Revell

Mike Gilchrist

Jeremy Beaulieu

Brian O'Meara

Long Qu

Joseph Brown

Santiago Claramunt

phangorn-package function

Maintainer: Klaus Schliep <a href="/link/klaus.schliep%40gmail.com?package=phangorn&version=2.12.1" data-mini-rdoc="phangorn::klaus.schliep@gmail.com">klaus.schliep@gmail.com</a> (<a href="https://orcid.org/0000-0003-2941-0161">ORCID</a>)
Authors:<ul>
<li>Emmanuel Paradis (<a href="https://orcid.org/0000-0003-3092-2199">ORCID</a>)</li>
<li>Leonardo de Oliveira Martins (<a href="https://orcid.org/0000-0001-5247-1320">ORCID</a>)</li>
<li>Alastair Potts</li>
<li>Iris Bardel-Kahr (<a href="https://orcid.org/0000-0002-8950-834X">ORCID</a>)</li>
</ul>Other contributors:<ul>
<li>Tim W. White [contributor]</li>
<li>Cyrill Stachniss [contributor]</li>
<li>Michelle Kendall <a href="/link/m.kendall%40imperial.ac.uk?package=phangorn&version=2.12.1" data-mini-rdoc="phangorn::m.kendall@imperial.ac.uk">m.kendall@imperial.ac.uk</a> [contributor]</li>
<li>Keren Halabi [contributor]</li>
<li>Richel Bilderbeek [contributor]</li>
<li>Kristin Winchell [contributor]</li>
<li>Liam Revell [contributor]</li>
<li>Mike Gilchrist [contributor]</li>
<li>Jeremy Beaulieu [contributor]</li>
<li>Brian O'Meara [contributor]</li>
<li>Long Qu [contributor]</li>
<li>Joseph Brown (<a href="https://orcid.org/0000-0002-3835-8062">ORCID</a>) [contributor]</li>
<li>Santiago Claramunt (<a href="https://orcid.org/0000-0002-8926-5974">ORCID</a>) [contributor]</li>
</ul>

Author

<img src='figures/logo.png' style='float: right' alt='logo' width='120' />
Allows for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation (Schliep 2011). Offers methods for tree comparison, model selection and visualization of phylogenetic networks as described in Schliep et al. (2017).

phangorn: Phylogenetic Reconstruction and Analysis — phangorn-package

Maintainer: Klaus Schliep <a href='mailto:klaus.schliep@gmail.com'>klaus.schliep@gmail.com</a> (<a href='https://orcid.org/0000-0003-2941-0161'>ORCID</a>)
Authors:<ul>
<li>Emmanuel Paradis (<a href='https://orcid.org/0000-0003-3092-2199'>ORCID</a>)</li>
<li>Leonardo de Oliveira Martins (<a href='https://orcid.org/0000-0001-5247-1320'>ORCID</a>)</li>
<li>Alastair Potts</li>
<li>Iris Bardel-Kahr (<a href='https://orcid.org/0000-0002-8950-834X'>ORCID</a>)</li>
</ul>

Other contributors:<ul>
<li>Tim W. White [contributor]</li>
<li>Cyrill Stachniss [contributor]</li>
<li>Michelle Kendall <a href='mailto:m.kendall@imperial.ac.uk'>m.kendall@imperial.ac.uk</a> [contributor]</li>
<li>Keren Halabi [contributor]</li>
<li>Richel Bilderbeek [contributor]</li>
<li>Kristin Winchell [contributor]</li>
<li>Liam Revell [contributor]</li>
<li>Mike Gilchrist [contributor]</li>
<li>Jeremy Beaulieu [contributor]</li>
<li>Brian O'Meara [contributor]</li>
<li>Long Qu [contributor]</li>
<li>Joseph Brown (<a href='https://orcid.org/0000-0002-3835-8062'>ORCID</a>) [contributor]</li>
<li>Santiago Claramunt (<a href='https://orcid.org/0000-0002-8926-5974'>ORCID</a>) [contributor]</li>
</ul>

phangorn: Phylogenetic Reconstruction and Analysis

phangorn-package: phangorn: Phylogenetic Reconstruction and Analysis

Description

Arguments

Author

See Also