delta.score

0th

Percentile

Computes the \(\delta\) score

Computes the treelikeness

Keywords
cluster
Usage
delta.score(x, arg = "mean", ...)
Arguments
x

an object of class phyDat

arg

Specifies the return value, one of "all", "mean" or "sd"

...

further arguments passed through dist.hamming

Value

A vector containing the \(\delta\) scores.

References

BR Holland, KT Huber, A Dress, V Moulton (2002) \(\delta\) Plots: a tool for analyzing phylogenetic distance data Russell D. Gray, David Bryant, Simon J. Greenhill (2010) On the shape and fabric of human history Molecular Biology and Evolution, 19(12) 2051--2059

Russell D. Gray, David Bryant, Simon J. Greenhill (2010) On the shape and fabric of human history Phil. Trans. R. Soc. B, 365 3923--3933; DOI: 10.1098/rstb.2010.0162

See Also

dist.hamming

Aliases
  • delta.score
Examples
# NOT RUN {
data(yeast)
hist(delta.score(yeast, "all"))

# }
Documentation reproduced from package phangorn, version 2.5.5, License: GPL (>= 2)

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