distanceHadamard

0th

Percentile

Distance Hadamard

Distance Hadamard produces spectra of splits from a distance matrix.

Keywords
cluster
Usage
distanceHadamard(dm, eps = 0.001)
Arguments
dm

A distance matrix.

eps

Threshold value for splits.

Value

distanceHadamard returns a matrix. The first column contains the distance spectra, the second one the edge-spectra. If eps is positive an object of with all splits greater eps is returned.

References

Hendy, M. D. and Penny, D. (1993). Spectral Analysis of Phylogenetic Data. Journal of Classification, 10, 5-24.

See Also

hadamard, lento, plot.networx, neighborNet

Aliases
  • distanceHadamard
Examples
# NOT RUN {
data(yeast)
dm <- dist.hamming(yeast)
dm <- as.matrix(dm)
fit <- distanceHadamard(dm)
lento(fit)
plot(as.networx(fit), "2D")

# }
Documentation reproduced from package phangorn, version 2.5.5, License: GPL (>= 2)

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