neighborNet

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Computes a neighborNet from a distance matrix

Computes a neighborNet, i.e. an object of class networx from a distance matrix.

Keywords
hplot
Usage
neighborNet(x, ord = NULL)
Arguments
x

a distance matrix.

ord

a circular ordering.

Details

neighborNet is still experimental. The cyclic ordering sometimes differ from the SplitsTree implementation, the ord argument can be used to enforce a certain circular ordering.

Value

neighborNet returns an object of class networx.

References

Bryant, D. & Moulton, V. (2004) Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks. Molecular Biology and Evolution, 2004, 21, 255-265

See Also

splitsNetwork, consensusNet, plot.networx, lento, cophenetic.networx, distanceHadamard

Aliases
  • neighborNet
Examples
# NOT RUN {
data(yeast)
dm <- dist.ml(yeast)
nnet <- neighborNet(dm)
plot(nnet, "2D")

# }
Documentation reproduced from package phangorn, version 2.5.5, License: GPL (>= 2)

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