phangorn-package

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Phylogenetic analysis in R

Phylogenetic analysis in R (Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation)

Keywords
package
Details

The complete list of functions can be displayed with library(help = phangorn).

Further information is available in several vignettes. To show the available vignettes in an HTML browser type browseVignettes("phangorn").

Trees Constructing phylogenetic trees (source, pdf)
phangorn-specials Advanced features (source, pdf)
Ancestral Ancestral sequence reconstruction (source, pdf)
Networx Splits and Networx (source, html)

The first vignette (to display type vignette('Trees')) gives an introduction in phylogenetic analysis with phangorn. The second vignette (phangorn-special) covers more advanced feature like defining special character spaces and things which fit nowhere else. More information on phangorn can be found on http://www.phangorn.org.

References

Schliep K.P. (2011) phangorn: Phylogenetic analysis in R. Bioinformatics, 27(4) 592-593

Aliases
  • phangorn-package
  • phangorn
Documentation reproduced from package phangorn, version 2.5.5, License: GPL (>= 2)

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