phase (version 1.2.9)

allActograms: Generate actograms

Description

This function generates a composite figure with actograms for all flies in a DAM scanned monitor file. Input for this function must be an output from the binData() function. The output of this function is a large plotly object. This function requires the packages "plotly" and "zoo".

Usage

allActograms(data, bin = 30, t.cycle = 24, color = rgb(0, 0, 0, 1))

Value

A plotly

htmlwidget with 32 actograms in a 4-by-8 array.

Arguments

data

Input data file. The input for this function must be the output of the function binData(). See ??binData().

bin

Intervals in which data are saved (in minutes). This defaults to 30.

t.cycle

Define the period of the environmental cycle or a single day in hours. This defaults to 24.

color

Color of actograms in rgb format. The input for this must be a vector with 4 values, i.e., r,g,b,transparency. The values for r,g,b can only be between 0 and 1. 0,0,0 would be black and 1,1,1 would be white. Transparency values can also go from 0 to 1, 0 being fully transparent and 1 being fully opaque.

Examples

td <- trimData(data = df, start.date = "19 Dec 20", start.time = "21:00",
n.days = 3, bin = 1, t.cycle = 24)
bd <- binData(data = td)
actograms <- allActograms(data = bd)