phase (version 1.2.9)

sleepStages: Plot sleep stages in individual flies

Description

Allows users to generate individual plots of sleep stages in flies. Sleep stages are defined as follows: 5 to 30-min as short sleep (light blue), 30 to 60-min as intermediate sleep (medium blue) and 60 to 720-min as deep sleep (dark blue). Activity is plotted in red. The input for this function must be the output of the trimData() function. The output of this function is a plot. Note: At this moment, this works accurately only for 24-h days.

Usage

sleepStages(data, n.days, channel = 1, photoperiod = 12)

Value

A plot with the day-time and night-time sleep stages of a user defined fly for the number of cycles provided by the user.

Arguments

data

Input data file. The input for this function must be the output of the function trimData(). See ??trimData().

n.days

The number of cycles for which sleep stages must be visualized.

channel

The channel number of the fly to be visualized.

photoperiod

This value determines the duration of photo-phase and scoto-phase of the 24-h day. Defaults to 12.

Examples

if (FALSE) {
td <- trimData(data = df, start.date = "19 Dec 20", start.time = "21:00",
n.days = 2, bin = 1, t.cycle = 24)
sleepStages(data = td, n.days = 1)
}