phenoDist (version 1.20.0)

Phenotypic distance measures

Description

PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.

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Version

1.20.0

License

LGPL-2.1

Homepage

http://www.dkfz.de/signaling

Maintainer

Xian Zhang

Last Published

February 15th, 2017

Functions in phenoDist (1.20.0)

PDMByKS

Compute phenotypic distance matrix by Kolmogorov-Smirnov statistics

distToNeg

PDMBySvmWeightVector

Compute phenotypic distance matrix by SVM weight vector

PDMByFactorAnalysis

Calculate phenotypic distance matrix by factor analysis

clusterDist

enrichAnalysis

ctlSeparatn

Calculate control separation

PDMByWellAvg

Compute phenotypic distance matrix with well features

repCorr

repDistRank

PDMBySvmAccuracy

Compute phenotypic distance matrix by SVM classification accuracy