heatmapPhenoTest-methods

heatmapPhenoTest,ExpressionSet,character-method

heatmapPhenoTest,ExpressionSet,list-method

heatmapPhenoTest,ExpressionSet,missing-method

heatmapPhenoTest,ExpressionSet,GeneSet-method

heatmapPhenoTest,ExpressionSet,GeneSetCollection-method


Methods for function <code>heatmapPhenoTest</code> in Package `phenoTest'. For
more information read the function's manual.


methods

Tools to test correlation between gene expression and
phenotype in a way that is efficient, structured, fast and
scalable. GSEA is also provided.

Evarist Planet

phenoTest

Tools to test association between gene expression and phenotype
in a way that is efficient, structured, fast and scalable. We
also provide tools to do GSEA (Gene set enrichment analysis)
and copy number variation.

heatmapPhenoTest-methods function

<dl> <dt><code>signature(x = "ExpressionSet", signatures = "character")</code></dt><dd>
Method for an <code>ExpressionSet</code> object and one signature stored in an
object of class <code>character</code>.
</dd> <dt><code>signature(x = "ExpressionSet", signatures = "list")</code></dt><dd>
Method for an <code>ExpressionSet</code> object and several signatures stored
in an object of class <code>list</code>.
</dd> <dt><code>signature(x = "ExpressionSet", signatures = "missing")</code></dt><dd>
Method for an <code>ExpressionSet</code> object and no signatures.
</dd> <dt><code>signature(x = "ExpressionSet", signatures = "GeneSet")</code></dt><dd>
Method for an <code>ExpressionSet</code> object and one signature stored in an
object of class <code>GeneSet</code>.
</dd> <dt><code>signature(x = "ExpressionSet", signatures = "GeneSetCollection")</code></dt><dd>
Method for an <code>ExpressionSet</code> object and several signatures stored
in an object of class <code>GeneSetCollection</code>.
</dd> </dl>

Methods

 Methods for Function heatmapPhenoTest in Package `phenoTest'

heatmapPhenoTest-methods: Methods for Function heatmapPhenoTest in Package `phenoTest'

Description

Arguments

Methods