barplotSignatures-methods

barplotSignatures,epheno,character-method

barplotSignatures,epheno,GeneSetCollection-method

barplotSignatures,epheno,GeneSet-method

barplotSignatures,epheno,list-method


Methods for function <code>barplotSignatures</code> in Package
`phenoTest'. For more information read the function's manual.


methods

Tools to test correlation between gene expression and
phenotype in a way that is efficient, structured, fast and
scalable. GSEA is also provided.

Evarist Planet

phenoTest

Tools to test association between gene expression and phenotype
in a way that is efficient, structured, fast and scalable. We
also provide tools to do GSEA (Gene set enrichment analysis)
and copy number variation.

barplotSignatures-methods function

<dl> <dt><code>signature(x = "epheno", signatures = "character")</code></dt><dd>
Method for an <code>epheno</code> object and one signature stored in an object
of class <code>character</code>.
</dd> <dt><code>signature(x = "epheno", signatures = "GeneSetCollection")</code></dt><dd>  
Method for an <code>epheno</code> object and several signatures stored in an
object of class <code>GeneSetCollection</code>.
</dd> <dt><code>signature(x = "epheno", signatures = "GeneSet")</code></dt><dd>        
Method for an <code>epheno</code> object and one signature stored in an object
of class <code>GeneSet</code>.
</dd> <dt><code>signature(x = "epheno", signatures = "list")</code></dt><dd>
Method for an <code>epheno</code> object and several signatures stored in an
object of class <code>list</code>.
</dd> </dl>

Methods

Methods for function <code>barplotSignatures</code> in Package
`phenoTest'. For more information read the function's manual.

barplotSignatures-methods: Methods for Function barplotSignatures in Package `phenoTest'

Description

Arguments

Methods