Format
The format is:
Formal class 'epheno' [package "phenoTest"] with 8 slots
..@ p.adjust.method : chr "none"
..@ assayData :
..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots
.. .. ..@ varMetadata :'data.frame': 5 obs. of 1 variable:
.. .. .. ..$ labelDescription: chr [1:5] NA NA NA NA ...
.. .. ..@ data :'data.frame': 12 obs. of 5 variables:
.. .. .. ..$ phenoName : Factor w/ 3 levels "lymph.node.status",..: 3 3 3 3 3 1 1 1 2 3 ...
.. .. .. ..$ phenoClass: Factor w/ 3 levels "categorical",..: 2 2 2 2 2 1 1 1 3 2 ...
.. .. .. ..$ phenoType : Factor w/ 3 levels "mean","pval",..: 1 1 1 3 3 1 1 3 3 2 ...
.. .. .. ..$ meanLabel : Factor w/ 5 levels "[45.2,49.2)",..: 1 2 3 NA NA 4 5 NA NA NA ...
.. .. .. ..$ survTime : Factor w/ 1 level "Months2Relapse": NA NA NA NA NA NA NA NA 1 NA ...
.. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns"
.. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots
.. .. .. .. ..@ .Data:List of 1
.. .. .. .. .. ..$ : int [1:3] 1 1 0
..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots
.. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable:
.. .. .. ..$ labelDescription: chr(0)
.. .. ..@ data :'data.frame': 1000 obs. of 0 variables
.. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns"
.. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots
.. .. .. .. ..@ .Data:List of 1
.. .. .. .. .. ..$ : int [1:3] 1 1 0
..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots
.. .. ..@ name : chr ""
.. .. ..@ lab : chr ""
.. .. ..@ contact : chr ""
.. .. ..@ title : chr ""
.. .. ..@ abstract : chr ""
.. .. ..@ url : chr ""
.. .. ..@ pubMedIds : chr ""
.. .. ..@ samples : list()
.. .. ..@ hybridizations : list()
.. .. ..@ normControls : list()
.. .. ..@ preprocessing : list()
.. .. ..@ other : list()
.. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots
.. .. .. .. ..@ .Data:List of 1
.. .. .. .. .. ..$ : int [1:3] 1 0 0
..@ annotation : chr "hgu133a"
..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots
.. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable:
.. .. .. ..$ labelDescription: chr(0)
.. .. ..@ data :'data.frame': 12 obs. of 0 variables
.. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns"
.. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots
.. .. .. .. ..@ .Data:List of 1
.. .. .. .. .. ..$ : int [1:3] 1 1 0
..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots
.. .. ..@ .Data:List of 4
.. .. .. ..$ : int [1:3] 2 12 0
.. .. .. ..$ : int [1:3] 2 10 0
.. .. .. ..$ : int [1:3] 1 3 0
.. .. .. ..$ : int [1:3] 1 0 0